PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00043.90
Common NameJCGZ_22608, LOC105646169
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YC
Protein Properties Length: 272aa    MW: 30633.6 Da    PI: 5.8695
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00043.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.41.4e-55891931102
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql++fw++q   +e++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+f+leltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflv
  Jcr4S00043.90  89 QLQMFWANQmqeVEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFVLELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 184
                    89******9777799********************************************************************************* PP

          NF-YC  94 divprdelk 102
                    di+prdelk
  Jcr4S00043.90 185 DIIPRDELK 193
                    ******975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.06E-3467183IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.4E-37103175IPR009072Histone-fold
PfamPF008084.6E-21111174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDQSEQTQQQ QQQQQSQQLP VMGVVAGAAQ MAYTTTPYQT AGMMASGTPA MAVPSSTQAP  60
STYSNSPHQL TYQQAQHFHH QQQQQQQQQL QMFWANQMQE VEQTTDFKNH SLPLARIKKI  120
MKADEDVRMI SAEAPVIFAK ACEMFVLELT LRSWIHTEEN KRRTLQKNDI AAAISRTDVF  180
DFLVDIIPRD ELKEEGLGVT KATIPMVGSP ADMPYYYVPP QHPVGPPGMI MGKPVDQAAV  240
YGAQQPRPPV AFMPWPQNQP QQQQPQQQQS DN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-429018919119HapE
4g92_C3e-429018919119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161167RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087361.10.0PREDICTED: nuclear transcription factor Y subunit C-2
TrEMBLA0A067JQF00.0A0A067JQF0_JATCU; Uncharacterized protein
STRINGPOPTR_0005s09770.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-75nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]